PUBLICATIONS
(Click on the journal name to view the papers/Google Scholar)
(Journals and useful websites)
[2024]
37. Namil Son*, Heejin Kim*, Jaeil Kim, Jihye Park, Dohwan Byun, Sang-jun Park, Hyein Kim, Yeong Mi Park, Pierre Bourguet, Frédéric Berger, and Kyuha Choi (2024) The histone variant H2A.W restricts heterochromatic crossovers in Arabidopsis. Under revision
36. Dohwan Byun, Namil Son, Heejin Kim, Jaeil Kim, Jihye Park, Sang-jun Park, Hyein Kim, Jaebeom Kim, Juhyun Kim, Seula Lee, Youbong Hyun, Piotr A. Ziolkowski, Ian R. Henderson, and Kyuha Choi (2024) COmapper: High-resolution mapping of meiotic crossovers by long-read sequencing in Arabidopsis. Bioxriv
35. Heejin Kim*, Jaeil Kim*, Namil Son, Pallas Kuo, Chris Morgan, Aurélie Chambon, Dohwan Byun, Jihye Park, Youngkyung Lee, Yeong Mi Park, John A. Fozard, Julie Guérin, Aurélie Hurel, Christophe Lambing, Martin Howard, Ildoo Hwang, Raphael Mercier, Mathilde Grelon, Ian R. Henderson, and Kyuha Choi (2024) Control of meiotic crossover interference by a proteolytic chaperone network. Nature Plants 10, 453–468
[2023]
34. Tuong Vi T Dang, Seungchul Lee, Hyunwoo Cho, Kyuha Choi, and Ildoo Hwang (2023) The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis. Molecular Plants 16(7), 1131-1145
33. Seungchul Lee, Jaemyung Choi, Jihwan Park, Chang Pyo Hong, Daeseok Choi, Soeun Han, Kyuha Choi, Tae-Young Roh, Daehee Hwang, and Ildoo Hwang (2023) DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis. Genome Biology 24, 106
[2022]
32. Christophe Lambing, Pallas Kuo, Jaeil Kim, Kim Osman, Amy Leanne Whitbread, Jianhua Yang, Kyuha Choi, F. Chris H. Franklin and Ian Henderson (2022) Differentiated function and localisation of SPO11-1 and PRD3 on the chromosome axis during meiotic DSB formation in Arabidopsis thaliana. PLoS Genetics 18(7), e1010298
31. Juhyun Kim*, Jihye Park*, Heejin Kim, Namil Son, Eun-Jung Kim, Jaeil Kim, Dohwan Byun, Youngkyung Lee, Yeong Mi Park, Divyashree C. Nageswaran, Pallas Kuo, Teresa Rose, Tuong Vi T. Dang, Ildoo Hwang, Christophe Lambing, Ian R. Henderson and Kyuha Choi (2022) Arabidopsis HEAT SHOCK FACTOR BINDING PROTEIN is required to limit meiotic crossovers and HEI10 transcription. EMBO Journal 41, e109958 (*equal contribution: co-first author)
30. Heejin Kim and Kyuha Choi (2022) Fast and Precise: How to Measure Meiotic Crossovers in Arabidopsis. Molecules and Cells 45, 273-283
29. Dohwan Byun and Kyuha Choi (2022) High-throughput fluorescent pollen tetrad analysis using DeepTetrad. Methods in Molecular Biology 2022; 2484, 277-290
28. Olivier Da Ines, Kyuha Choi, Mónica Pradillo and Christophe Lambing (2022) Editorial: Meiotic Recombination and DNA Repair: New Approaches to Solve Old Questions in Model and Non-model Plant Species. Frontiers in Plant Sciences 13, 841402
[2021]
27. Juhyun Kim*, Jihye Park*, Heejin Kim, Namil Son, Christophe Lambing, Eun-Jung Kim, Jaeil Kim, Dohwan Byun, Youngkyung Lee, Yeong Mi Park, Divyashree C. Nageswaran, Pallas Kuo, Tuong Vi T. Dang, Ildoo Hwang, Ian R. Henderson and Kyuha Choi (2021) HEAT SHOCK FACTOR BINDING PROTEIN limits meiotic crossovers by repressing HEI10 transcription. bioRxiv
26. Divyashree C. Nageswaran*, Jaeil Kim*, Christophe Lambing, Juhyun Kim, Jihye Park, Eun-Jung Kim, Hyun Seob Cho, Heejin Kim, Dohwan Byun, Yeong Mi Park, Pallas Kuo, Seungchul Lee, Andrew J. Tock, Xiaohui Zhao, Ildoo Hwang, Kyuha Choi* and Ian R. Henderson* (2021) HIGH CROSSOVER RATE1 encodes PROTEIN PHOSPHATASE X1 and restricts meiotic crossovers in Arabidopsis. Nature Plants 7, 452–467 [pdf] co-corresponding author.
[2020]
25. Christophe Lambing, Andrew J. Tock, Stephanie D. Topp, Kyuha Choi, Pallas C. Kuo, Alexander R. Blackwell, Xiaohui Zhao, Kim Osman, James D. Higgins, F. Chris H. Franklin, Ian R. Henderson (2020) Interacting genomic landscapes of REC8-cohesin, chromatin and meiotic recombination in Arabidopsis thaliana. Plant Cell 32, 218–239 [pdf]
24. Eun-Cheon Lim, Jaeil Kim, Jihye Park, Eun-Jung Kim, Juhyun Kim, Yeong Mi Park, Hyun Seob Cho, Dohwan Byun, Ian R Henderson, Gregory P Copenhaver, Ildoo Hwang and Kyuha Choi (2020) DeepTetrad: high-throughput image analysis of meiotic tetrads by deep learning in Arabidopsis thaliana. Plant Journal 101, 473-483. [pdf]
[2019]
23. Christophe Lambing, Kyuha Choi, Alexander R. Blackwell and Ian R. Henderson (2019) Chromatin Immunoprecipitation of Meiotically Expressed Proteins from Arabidopsis thaliana Flowers. Methods in Molecular Biology 2020;2061:219-236. [pdf]
22. Charles J. Underwood and Kyuha Choi (2019) Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination. Chromosoma 128 (3), 279-296. [pdf]
21. Jaeil Kim and Kyuha Choi (2019) Signaling-mediated meiotic recombination in plants. Current Opinion in Plant Biology 51, 44-50 [pdf]
[2018]
20. Heidi Serra, Kyuha Choi, Xiaohui Zhao, Alexander R. Blackwell, Juhyun Kim and Ian R. Henderson (2018) Interhomolog polymorphism shapes meiotic crossover within RAC1 and RPP13 disease resistance genes. PLOS genetics 14(12), e1007843 [pdf]
19. Hyunwoo Cho*, Hyun Seob Cho*, Hoyoung Nam, Hunho Jo, Joonseon Yoon, Chanyoung Park, Tuong Vi T. Dang, Eunah Kim, Jongmin Jeong, Soyoung Park, Eva-Sophie Wallner, Hyungjun Youn, Jongmin Park, Jinseong Jeon, Hojin Ryu, Thomas Greb, Kyuha Choi, Yoontae Lee, Sung Key Jang, Changil Ban and Ildoo Hwang (2018) Translational control of phloem development by RNA G-quadruplex–JULGI determines plant sink strength. Nature Plants 4, 376-390 [pdf]
18. Kyuha Choi, Xiaohui Zhao, Andrew J. Tock, Christophe Lambing, Charles J. Underwood, Thomas J. Hardcastle, Heïdi Serra, Juhyun Kim, Hyun Seob Cho, Jaeil Kim, Piotr A. Ziolkowski, Nataliya E. Yelina, Ildoo Hwang, Robert A. Martienssen and Ian R. Henderson (2018) Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis transposons and gene regulatory regions. Genome Research 28, 532-546 [pdf] * This paper was highlighted and recommended by Plantae Blog
17. Charles J. Underwood, Kyuha Choi, Christophe Lambing, Xiaohui Zhao, Heïdi Serra, Filipe Borges, Joe Simorowski, Evan Ernst, Yannick Jacob, Ian R. Henderson,* and Robert A. Martienssen* (2018) Epigenetic activation of meiotic recombination in Arabidopsis centromeres by disruption of H3K9me2 and non-CG DNA methylation. Genome Research 28, 519-531 [pdf]
[2017]
16. Kyuha Choi (2017) Advances towards Controlling Meiotic Recombination for Plant Breeding. Molecules and Cells 40(11), 814~822. [pdf]
Before joining POSTECH (2017~2002, SNU, University of Cambridge)
: 10 first-author papers and 5 co-author papers
15. Piotr A. Ziolkowski*, Charles Underwood*, Christophe A. Lambing, Marina Martinez-Garcia, Emma J. Lawrence, Liliana Ziolkowska, Kyuha Choi, Chris Franklin, Robert A. Martienssen and Ian R. Henderson (2017) Natural variation and dosage of the the HEI10 meiotic E3 ligase in HEI10 reveals dosage-control of Arabidopsis meiotic crossover formation recombination. Genes and Development 31, 306-317 [pdf]
14. Kyuha Choi, Nataliya E. Yelina, Heïdi Serra and Ian R. Henderson (2017) Quantification and sequencing of crossover recombinant molecules from Arabidopsis pollen DNA. Methods in Molecular Biology 2017;1551, 23-57 [pdf]
13. Eunjoo Seo*, Chulmin Park*, Kyuha Choi, Dongseon Lee, Chaok Seok, and Ilha Lee (2016) Molecular evolution of ACTIN RELATED PROTEIN 6, a component of SWR1 complex in Arabidopsis. Journal of Plant Biology 59, 467-477 [pdf]
12. Kyuha Choi*, Carsten Reinhard*, Heïdi Serra, Xiaohui Zhao, Piotr A. Ziolkowski, Charles J. Underwood, Thomas J. Hardcastle, Nataliya E. Yelina, Catherine Griffin, Matthew Jackson, Gil McVean, Christine Mezard, Gregory P. Copenhaver and Ian R. Henderson (2016) Recombination rate heterogeneity within Arabidopsis disease resistance genes. PLoS genetics 14, e1006179. (*equal contribution) [pdf]
11. Kyuha Choi, Juhyun Kim, Sebastian Y. Müller, Mijin Oh, Charles Underwood, Ian R Henderson and Ilha Lee (2016) Regulation of microRNA-mediated developmental changes by SWR1 chromatin remodelling complex in Arabidopsis thaliana. Plant Physiology 171, 1128-43. First and co-corresponding author. [pdf]
10. Kyuha Choi and Ian R Henderson (2015) Meiotic Recombination Hotspots – a Comparative View. Plant Journal 83, 52-61. [pdf]
9. Piotr A Ziolkowski, Luke E Berchowitz, Christophe Lambing, Nataliya E Yelina, Xiaohui Zhao, Krystyna A Kelly, Kyuha Choi, Liliana Ziolkowska, Viviana June, Eugenio Sanchez-Moran, Chris Franklin, Gregory P Copenhaver, Ian R Henderson (2015) Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis. eLife 4, e03708. [pdf]
8. Simon Amiard, Margaux Olivier, Elizabeth Allain, Kyuha Choi, Richard Smith, Ian Henderson, Charles White, Maria Gallego (2014) Telomere stability and development of ctc1 mutants are rescued by inhibition of EJ recombination pathways in a telomerase-dependent manner. Nucleic Acids Research 42, 11979-11991.
7. Kyuha Choi*, Xiaohui Zhao*, Krystyna A Kelly, Oliver Venn, James D Higgins, Nataliya E Yelina, Thomas J Hardcastle, Piotr A Ziolkowski, Gregory P Copenhaver, F Chris H Franklin, Gil McVean and Ian R Henderson (2013) Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters. Nature Genetics 45, 1327-1336 (*equal contribution) [pdf]
6. Nataliya E Yelina*, Kyuha Choi* Liudmila Chelysheva, Malcolm Macaulay, Bastiaan de Snoo, Erik Wijnker, Nigel Miller, Jan Drouaud, Mathilde Grelon, Gregory P Copenhaver, Christine Mezard, Krystyna A Kelly, Ian R Henderson (2012) Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics 8, e1002844 (*equal contribution: co-first author) [pdf]
5. Kyuha Choi*, Juhyun Kim*, Hyun-Ju Hwang*, Sanghee Kim, Chulmin Park, Sang Yeol Kim and Ilha Lee (2011) The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors. Plant Cell 23, 289-303 [pdf]
4. Kyuha Choi, Chulmin Park, Jungeun Lee, Mijin Oh, Bosl Noh, and Ilha Lee (2007) Arabidopsis homologs of components of SWR1 complex regulate flowering and plant development. Development 134, 1931-1941 [pdf]
3. Sanghee Kim, Kyuha Choi, Chulmin Park, Hyun-Ju Hwang and Ilha Lee (2006) SUPPRESSOR OF FRIGIDA4, encoding a C2H2-Type zinc finger protein, represses flowering by transcriptional activation of Arabidopsis FLOWERING LOCUS C. Plant Cell 18, 2985-2998 [pdf]
2. Kyuha Choi*, Sanghee Kim*, Sang Yeol Kim, Minsoo Kim, Youbong Hyun, Horim Lee, Sunghwa Choe, Sang-Gu Kim, Scott Michaels and Ilha Lee (2005) SUPPRESSOR OF FRIGIDA3 encodes a nuclear ACTIN-RELATED PROTEIN6 required for floral repression in Arabidopsis. Plant Cell 17, 2647-2660 [pdf]
1. Kyu Ha Choi, Choo Bong Hong, and Woo Taek Kim (2002) Isolation and characterization of drought-induced cDNA clones from hot pepper. Journal of Plant Biology 45, 212-218